General information:
O-glycans released from soluble and insoluble pig mucins isolateed from healthy and Brachyspira hyodysenteriae infected colon tissues
Growth/harvest conditions for recombinantly produced material:
NA
Treatments and/or storage conditions:
Soluble and insoluble mucins were purified from pig colon tissues using isopycnic gradient centrifugation. O-glycans were released chemically using reductive beta-elimination
For commercial material, vendor and applicable item information:
NA
Generation of chemically derived material:
NA
Purification steps:
Released O-glycans were desalted using strong cation exchange Dowex resin packed as a microcolumn in top of hydrphobic C18 material
Sample name:
O-linked oligosaccharides
Instrument: Thermo Fisher 1100 Series
Manufacturer url: NA
Injector: NA
Injector settings: NA
Manufacturer: In-house
Model: Custom made Hypercarb
Type of Chromatography: Liquid chromatography
Type of Material: Porous graphitized carbon
Column diameter: 0.25
Column length: 100
Particle size: 5
Manufacturer url: NA
Temperature: NA
Solvent a: 10mM ammonium bicarbonate
Solvent b: 10mM ammonium bicarbonate in 80% Acetonitrile
Other solvent: NA
Flow rate: 250 nL/min
Flow gradient: NA
Run time: 78 minutes
Phase: Normal
Date stamp: Tue Aug 04 UTC 2015
Instrument: Thermo Fisher LTQ Linear Ion Trap ESI
Customizations from the manufacturer's specification:
NA
ion_mode: -
Sprayer type : Liquid chromatography
Interface name: NA
Other data for the Interface: NA
Sprayer name: need to check
Other data for the sprayer: NA
Relevant voltages: NA
Degree of prompt fragmentation evaluated: No
In-source dissociation performed: No
Other parameters if discriminant for the experiment: NA
Plate composition (or type): NA
Matrix composition: NA
Deposition technique: NA
Relevant voltages: NA
Degree of prompt fragmentation evaluated: NA
PSD (or LID/ISD) summary: NA
Operation with or without delayed extraction: NA
Laser type: NA
Other laser related parameters: NA
url: NA
Hardware options: NA
CID. Gas composition: NA
CID. Gas pressure: NA
CID. Collision energy: NA
ETD. Reagent gas: NA
ETD. Pressure: NA
ETD. Reaction time: NA
ETD. Reagent atoms: NA
ECD. Emitter type: NA
ECD. Voltage: NA
ECD. Current: NA
TOF. Reflectron status: NA
Ion trap. Final MS stage achieved: NA
Ion mobility. Gas type : NA
Ion mobility. Pressure: NA
Ion mobility. Instrument parameters: NA
Peak selection: NA
FT-ICR. Pulse: NA
FT-ICR. Width: NA
FT-ICR. IR: Decay time: NA
FT-ICR. IR: NA
FT-ICR. Other parameters: NA
Detector type: NA