Structure

    redEnd--??1D-GalNAc,p(--3?1D-Gal,p)--6b1D-GlcNAc,p--??1S$MONO,Und,-H,0,redEnd

An E-workflow for implementing guidelines in glycomics mass spectrometry

possibly a core 8 since Gala1

GlyTouCan Accession Number: Loading...

Peak Intensity
204.94 2.6
262.85 3.3
282.08 28.8

Annotations:

B ?1D-GalNAc,p/#bcleavage--6b1D-GlcNAc,p--??1S$MONO,Und,-H,0,redEnd
282.32 7.2

Annotations:

B ?1D-GalNAc,p/#bcleavage--6b1D-GlcNAc,p--??1S$MONO,Und,-H,0,redEnd
283.11 4.4
341.71 4.5

Annotations:

^{0,4}A_{GalNAc} ?1D-GalNAc,p/#acleavage_0_4--6b1D-GlcNAc,p--??1S$MONO,Und,-H,0,redEnd
341.95 3.8

Annotations:

^{0,4}A_{GalNAc} ?1D-GalNAc,p/#acleavage_0_4--6b1D-GlcNAc,p--??1S$MONO,Und,-H,0,redEnd
361.21 2.8
406.97 7.8

Annotations:

Z redEnd--??1D-GalNAc,p(--3?1D-Gal,p/#zcleavage)--6b1D-GlcNAc,p--??1S/#lcleavage$MONO,Und,-H,0,redEnd
424.97 2.0

Annotations:

Y redEnd--??1D-GalNAc,p(--3?1D-Gal,p/#ycleavage)--6b1D-GlcNAc,p--??1S/#lcleavage$MONO,Und,-H,0,redEnd
425.35 3.1

Annotations:

Y redEnd--??1D-GalNAc,p(--3?1D-Gal,p/#ycleavage)--6b1D-GlcNAc,p--??1S/#lcleavage$MONO,Und,-H,0,redEnd
426.19 3.9
445.9 2.0
457.25 1.6
466.33 4.7
469.56 2.0
487.09 8.4

Annotations:

Z redEnd--??1D-GalNAc,p(--3?1D-Gal,p/#zcleavage)--6b1D-GlcNAc,p--??1S$MONO,Und,-H,0,redEnd
490.86 2.6
505.13 315.9

Annotations:

Y redEnd--??1D-GalNAc,p(--3?1D-Gal,p/#ycleavage)--6b1D-GlcNAc,p--??1S$MONO,Und,-H,0,redEnd
506.21 60.5
546.18 3.9
605.99 8.2
607.03 3.5

Annotations:

^{0,4}X_{Gal} redEnd--??1D-GalNAc,p(--3?1D-Gal,p/#xcleavage_0_4)--6b1D-GlcNAc,p--??1S$MONO,Und,-H,0,redEnd ^{1,3}X_{Gal} redEnd--??1D-GalNAc,p(--3?1D-Gal,p/#xcleavage_1_3)--6b1D-GlcNAc,p--??1S$MONO,Und,-H,0,redEnd ^{2,4}X_{Gal} redEnd--??1D-GalNAc,p(--3?1D-Gal,p/#xcleavage_2_4)--6b1D-GlcNAc,p--??1S$MONO,Und,-H,0,redEnd
625.09 3.3
711.17 3.6

There are 16 similar spectra:

Id Structure Score

3111

1.00

6650

1.00

1.00

3491

1.00

7648

1.00

7664

1.00

1.00

1.00

6705

1.00

0.98

0.98

0.97

5388

0.96

0.96

7877

0.87

4260

0.57

Structure Format

SNFG Oxford Text

Structure details

Reducing Mass: 666.19
(Calculated Monoisotopic)

Reducing End: Reduced

Persubstitution: Underivatised

Biological Context

Taxonomy - Bos Taurus
Tissue - Cervix Mucus

HPLC

Column NA

Method

  • 78 min gradient with Approx 3-5 ul/min (static split from 250 ul/min) run rate
  • 10 mM (NH4)HCO3
  • 10 mM (NH4)HCO3 in 80% acetonitrile

Mass Spec

Thermo Fisher LTQ Linear Ion Trap ESI

MIRAGE Structural data

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