Structure

    redEnd--?b1D-GlcNAc,p--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p)--4b1D-GlcNAc,p)--6a1D-Man,p--??1D-Man,p$MONO,Und,-H,0,redEnd

Standardization of PGC-LC-MS-based glycomics for sample specific glycotyping

PubMed Entry

File Name: Annotated_NG_Structures_update.gwp

GlycoPOST Entry: GPST000029

GlyTouCan Accession Number: Loading...

Peak Intensity
340.04 0.0

Annotations:

Too many annotations to display (≥ 100).
893.32 1.6986

Annotations:

Too many annotations to display (≥ 100).
1073.56 1.4629

Annotations:

Too many annotations to display (≥ 100).
1217.16 1.106

Annotations:

Too many annotations to display (≥ 100).
1276.64 8.1536

Annotations:

Y^{0,3}X_{GlcNAc} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#ycleavage)--4b1D-GlcNAc,p/#xcleavage_0_3$MONO,Und,-H,0,redEnd ^{2,4}A_{GlcNAc}Y b1D-GlcNAc,p/#acleavage_2_4--4b1D-Man,p((--3a1D-Man,p)--4b1D-GlcNAc,p/#ycleavage)--6a1D-Man,p$MONO,Und,-H,0,redEnd ^{2,4}A_{GlcNAc}Y b1D-GlcNAc,p/#acleavage_2_4--4b1D-Man,p(--3a1D-Man,p)--6a1D-Man,p--??1D-GlcNAc,p/#ycleavage$MONO,Und,-H,0,redEnd Z redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p)--4b1D-GlcNAc,p--4b1D-Man,p/#zcleavage$MONO,Und,-H,0,redEnd YY redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p)--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p)--4b1D-GlcNAc,p/#ycleavage)--6a1D-Man,p/#ycleavage$MONO,Und,-H,0,redEnd YY redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p)--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p/#ycleavage)--4b1D-GlcNAc,p/#ycleavage)--6a1D-Man,p$MONO,Und,-H,0,redEnd Y redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p)--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p)--6a1D-Man,p/#ycleavage$MONO,Und,-H,0,redEnd YY redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p)--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p/#ycleavage)--6a1D-Man,p--??1D-GlcNAc,p/#ycleavage$MONO,Und,-H,0,redEnd Z^{0,4}X_{GlcNAc} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p/#xcleavage_0_4--4b1D-Man,p((--3a1D-Man,p)--4b1D-GlcNAc,p)--6a1D-Man,p$MONO,Und,-H,0,redEnd Z^{0,4}X_{GlcNAc} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p/#xcleavage_0_4--4b1D-Man,p(--3a1D-Man,p)--6a1D-Man,p--??1D-GlcNAc,p$MONO,Und,-H,0,redEnd Z^{0,4}X_{Man} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p)--4b1D-GlcNAc,p)--6a1D-Man,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd Z^{1,3}X_{Man} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p)--4b1D-GlcNAc,p)--6a1D-Man,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd Z^{2,4}X_{Man} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p)--4b1D-GlcNAc,p)--6a1D-Man,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd ^{0,4}X_{Fuc}Z redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#xcleavage_0_4)--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p)--4b1D-GlcNAc,p)--6a1D-Man,p/#zcleavage$MONO,Und,-H,0,redEnd Z^{0,4}X_{GlcNAc} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p)--4b1D-GlcNAc,p/#xcleavage_0_4)--6a1D-Man,p$MONO,Und,-H,0,redEnd Z^{2,4}X_{GlcNAc} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p)--4b1D-GlcNAc,p/#xcleavage_2_4)--6a1D-Man,p$MONO,Und,-H,0,redEnd Z^{0,4}X_{Man} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p/#xcleavage_0_4)--4b1D-GlcNAc,p)--6a1D-Man,p$MONO,Und,-H,0,redEnd Z^{1,3}X_{Man} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p/#xcleavage_1_3)--4b1D-GlcNAc,p)--6a1D-Man,p$MONO,Und,-H,0,redEnd Z^{2,4}X_{Man} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p/#xcleavage_2_4)--4b1D-GlcNAc,p)--6a1D-Man,p$MONO,Und,-H,0,redEnd ^{0,4}X_{Fuc}Z redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#xcleavage_0_4)--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p/#zcleavage)--4b1D-GlcNAc,p)--6a1D-Man,p$MONO,Und,-H,0,redEnd Z^{0,4}X_{GlcNAc} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p)--6a1D-Man,p--??1D-GlcNAc,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd Z^{2,4}X_{GlcNAc} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p)--6a1D-Man,p--??1D-GlcNAc,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd Z^{0,4}X_{Man} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p/#xcleavage_0_4)--6a1D-Man,p--??1D-GlcNAc,p$MONO,Und,-H,0,redEnd Z^{1,3}X_{Man} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p/#xcleavage_1_3)--6a1D-Man,p--??1D-GlcNAc,p$MONO,Und,-H,0,redEnd Z^{2,4}X_{Man} redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p/#xcleavage_2_4)--6a1D-Man,p--??1D-GlcNAc,p$MONO,Und,-H,0,redEnd ^{0,4}X_{Fuc}Z redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#xcleavage_0_4)--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p/#zcleavage)--6a1D-Man,p--??1D-GlcNAc,p$MONO,Und,-H,0,redEnd Y redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p)--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p)--4b1D-GlcNAc,p/#ycleavage)--6a1D-Man,p$MONO,Und,-H,0,redEnd Y redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p)--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p)--6a1D-Man,p--??1D-GlcNAc,p/#ycleavage$MONO,Und,-H,0,redEnd Z redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p)--4b1D-GlcNAc,p)--6a1D-Man,p$MONO,Und,-H,0,redEnd Z redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p/#zcleavage)--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p)--6a1D-Man,p--??1D-GlcNAc,p$MONO,Und,-H,0,redEnd redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p)--4b1D-GlcNAc,p--4b1D-Man,p((--3a1D-Man,p)--4b1D-GlcNAc,p)--6a1D-Man,p$MONO,Und,-H,0,redEnd redEnd--?b1D-GlcNAc,p(--6a1L-Fuc,p)--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p)--6a1D-Man,p--??1D-GlcNAc,p$MONO,Und,-H,0,redEnd
1277.24 0.8427

Annotations:

Too many annotations to display (≥ 100).

N/A

Structure Format

SNFG Oxford Text

Structure details

Reducing Mass: 1275.48
(Calculated Monoisotopic)

Reducing End: Reduced

Persubstitution: Underivatised

Biological Context

Taxonomy - Mus musculus (Mouse)
Tissue - tissue
Cell line - macrophage

Mass Spec

Manufacturer: Thermo Fisher

Model: Scientific Velos Plus

Ion Mode: Negative

MIRAGE Structural data

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