Structure

    redEnd--?a1D-GalNAc,p--3b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,-H,0,redEnd

Standardization of PGC-LC-MS-based glycomics for sample specific glycotyping

PubMed Entry

File Name: Annotated_OG_structures.gwp

GlycoPOST Entry: GPST000029

GlyTouCan Accession Number: Loading...

250.0300.0350.0400.0450.0500.0550.0600.0m/z0.01.02.03.0Abundance
Peak Intensity
290.08 2.8737

Annotations:

B b1D-Gal,p/#bcleavage--3a2D-NeuAc,p$MONO,Und,-H,0,redEnd ^{0,3}X_{Gal} redEnd--?a1D-GalNAc,p--3b1D-Gal,p/#xcleavage_0_3--3a2D-NeuAc,p$MONO,Und,-H,0,redEnd ^{0,3}X_{GalNAc} redEnd--?a1D-GalNAc,p/#xcleavage_0_3--3b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,-H,0,redEnd
472.2 1.1666

Annotations:

Y^{2,4}X_{Hex} redEnd--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd B ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p$MONO,Und,-H,0,redEnd Z redEnd--??1Hex,p--??1Hex,p--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd Z redEnd--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p$MONO,Und,-H,0,redEnd Y redEnd--??1Hex,p--??1Hex,p--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd Y redEnd--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p$MONO,Und,-H,0,redEnd redEnd--??1Hex,p--??1Hex,p--??1Hex,p$MONO,Und,-H,0,redEnd redEnd--??1Hex,p(--??1Hex,p)--??1Hex,p$MONO,Und,-H,0,redEnd B ?1Hex,p/#bcleavage--??1Hex,p$MONO,Und,-H,0,redEnd BY ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd CZ ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd B ?1Hex,p/#bcleavage--??1Hex,p$MONO,Und,-H,0,redEnd Z redEnd--??1Hex,p--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd YZ redEnd--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd C ?1Hex,p/#ccleavage--??1Hex,p$MONO,Und,-H,0,redEnd CY ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd C ?1Hex,p/#ccleavage--??1Hex,p$MONO,Und,-H,0,redEnd Y redEnd--??1Hex,p--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd YY redEnd--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd B^{0,2}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd Z^{0,2}X_{Hex} redEnd--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd C^{0,2}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd Z^{2,5}X_{Hex} redEnd--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_2_5$MONO,Und,-H,0,redEnd Y^{0,4}X_{Hex} redEnd--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd Y^{1,3}X_{Hex} redEnd--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd
543.28 0.4161

Annotations:

CY^{0,4}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd CY^{1,3}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd CY^{2,4}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd C^{0,4}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd C^{1,3}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd C^{2,4}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd BZ ?1Hex,p/#bcleavage--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p$MONO,Und,-H,0,redEnd BZ ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd BY ?1Hex,p/#bcleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p$MONO,Und,-H,0,redEnd CZ ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p$MONO,Und,-H,0,redEnd B ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p$MONO,Und,-H,0,redEnd BY ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd CZ ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd BY ?1Hex,p/#bcleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p$MONO,Und,-H,0,redEnd CZ ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p$MONO,Und,-H,0,redEnd B ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p$MONO,Und,-H,0,redEnd BY ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd CZ ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd YZ redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd Z redEnd--??1Hex,p--??1Hex,p--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd CY ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p$MONO,Und,-H,0,redEnd C ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p$MONO,Und,-H,0,redEnd CY ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd YY redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd Y redEnd--??1Hex,p--??1Hex,p--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd B^{0,2}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p(--??1Hex,p/#xcleavage_0_2)--??1Hex,p$MONO,Und,-H,0,redEnd B^{0,2}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p--??1Hex,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd C^{0,3}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#xcleavage_0_3)--??1Hex,p$MONO,Und,-H,0,redEnd C^{1,4}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#xcleavage_1_4)--??1Hex,p$MONO,Und,-H,0,redEnd Z^{3,5}X_{Hex} redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_3_5$MONO,Und,-H,0,redEnd C^{0,3}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p--??1Hex,p/#xcleavage_0_3$MONO,Und,-H,0,redEnd C^{1,4}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p--??1Hex,p/#xcleavage_1_4$MONO,Und,-H,0,redEnd Z redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p$MONO,Und,-H,0,redEnd Z redEnd--??1Hex,p--??1Hex,p--??1Hex,p--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd Y redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p$MONO,Und,-H,0,redEnd Y redEnd--??1Hex,p--??1Hex,p--??1Hex,p--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd Y redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p$MONO,Und,-H,0,redEnd Y redEnd--??1Hex,p--??1Hex,p--??1Hex,p--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd C ?1Hex,p/#ccleavage--??1Hex,p$MONO,Und,-H,0,redEnd CYY ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd C ?1Hex,p/#ccleavage--??1Hex,p$MONO,Und,-H,0,redEnd CY ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd CY^{0,2}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd C^{0,2}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd
585.12 1.6728

Annotations:

BY^{0,2}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd CZ^{0,2}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd B^{0,2}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd CY^{0,2}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd C^{0,2}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd BY^{0,3}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#xcleavage_0_3$MONO,Und,-H,0,redEnd BY^{1,4}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#xcleavage_1_4$MONO,Und,-H,0,redEnd CZ^{0,3}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_0_3$MONO,Und,-H,0,redEnd CZ^{1,4}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_1_4$MONO,Und,-H,0,redEnd B^{0,3}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p/#xcleavage_0_3$MONO,Und,-H,0,redEnd B^{1,4}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p/#xcleavage_1_4$MONO,Und,-H,0,redEnd BZ^{0,4}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd BZ^{1,3}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd BZ^{2,4}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd BY^{0,4}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd BY^{1,3}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd BY^{2,4}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd CZ^{0,4}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd CZ^{1,3}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd CZ^{2,4}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd B^{0,4}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd B^{1,3}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd B^{2,4}X_{Hex} ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd BZ ?1Hex,p/#bcleavage--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p$MONO,Und,-H,0,redEnd BZ ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd ZZ redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd BY ?1Hex,p/#bcleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p$MONO,Und,-H,0,redEnd CZ ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p$MONO,Und,-H,0,redEnd B ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p$MONO,Und,-H,0,redEnd BY ?1Hex,p/#bcleavage--??1Hex,p--??1Hex,p--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd CZ ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd YZ redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd Z redEnd--??1Hex,p--??1Hex,p--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd CY ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p$MONO,Und,-H,0,redEnd C ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p$MONO,Und,-H,0,redEnd CY ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd YY redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd Y redEnd--??1Hex,p--??1Hex,p--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd Z^{0,2}X_{Hex} redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd Z^{2,5}X_{Hex} redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_2_5$MONO,Und,-H,0,redEnd C^{0,2}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p(--??1Hex,p/#xcleavage_0_2)--??1Hex,p$MONO,Und,-H,0,redEnd C^{0,2}X_{Hex} ?1Hex,p/#ccleavage--??1Hex,p--??1Hex,p--??1Hex,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd Y^{0,2}X_{Hex} redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd Z^{0,4}X_{Hex} redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd Z^{1,3}X_{Hex} redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd Z^{2,4}X_{Hex} redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd Z redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#zcleavage)--??1Hex,p$MONO,Und,-H,0,redEnd Z redEnd--??1Hex,p--??1Hex,p--??1Hex,p--??1Hex,p/#zcleavage$MONO,Und,-H,0,redEnd Y redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#ycleavage)--??1Hex,p$MONO,Und,-H,0,redEnd Y redEnd--??1Hex,p--??1Hex,p--??1Hex,p--??1Hex,p/#ycleavage$MONO,Und,-H,0,redEnd ^{0,3}X_{Hex} redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#xcleavage_0_3)--??1Hex,p$MONO,Und,-H,0,redEnd ^{1,4}X_{Hex} redEnd--??1Hex,p--??1Hex,p(--??1Hex,p/#xcleavage_1_4)--??1Hex,p$MONO,Und,-H,0,redEnd ^{0,3}X_{Hex} redEnd--??1Hex,p--??1Hex,p--??1Hex,p--??1Hex,p/#xcleavage_0_3$MONO,Und,-H,0,redEnd ^{1,4}X_{Hex} redEnd--??1Hex,p--??1Hex,p--??1Hex,p--??1Hex,p/#xcleavage_1_4$MONO,Und,-H,0,redEnd redEnd--??1Hex,p--??1Hex,p(--??1Hex,p)--??1Hex,p$MONO,Und,-H,0,redEnd redEnd--??1Hex,p--??1Hex,p--??1Hex,p--??1Hex,p$MONO,Und,-H,0,redEnd

N/A

Structure Format

SNFG Oxford Text

Structure details

Reducing Mass: 674.25
(Calculated Monoisotopic)

Reducing End: Reduced

Persubstitution: Underivatised

Biological Context

Taxonomy - Mus musculus (Mouse)
Tissue - tissue
Cell line - macrophage

Mass Spec

Manufacturer: Thermo Fisher

Model: Scientific Velos Plus

Ion Mode: Negative

MIRAGE Structural data

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