Structure

    redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p)--3b1D-Gal,p$MONO,Und,-H,0,redEnd

An E-workflow for implementing guidelines in glycomics mass spectrometry

GlyTouCan Accession Number: Loading...

Peak Intensity
204.17 1.8

Annotations:

ZY redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#zcleavage)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd YZ redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#ycleavage)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
212.01 2.9
217.79 2.0
218.01 2.0
219.0 0.4
226.04 1.0
230.02 0.4
235.21 0.6
236.17 0.8
244.12 0.6
248.16 1.0
254.24 0.5
257.99 0.6
274.17 0.4

Annotations:

^{0,2}X_{NeuGc}Z redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#xcleavage_0_2)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
288.17 3.6
292.08 1.2

Annotations:

Z^{3,5}X_{Gal} redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#zcleavage)--3b1D-Gal,p/#xcleavage_3_5$MONO,Und,-H,0,redEnd ^{1,4}A_{GalNAc} ?1D-GalNAc,p/#acleavage_1_4--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{0,2}X_{NeuGc}Y redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#xcleavage_0_2)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd
304.28 0.3

Annotations:

^{0,3}X_{NeuGc}Z redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#xcleavage_0_3)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
306.08 148.5

Annotations:

B ?1D-GalNAc,p/#bcleavage--6a2D-NeuGc,p$MONO,Und,-H,0,redEnd
307.13 12.5
321.86 0.5

Annotations:

^{0,3}X_{NeuGc}Y redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#xcleavage_0_3)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd
322.18 1.5

Annotations:

^{0,3}X_{NeuGc}Y redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#xcleavage_0_3)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd
323.28 0.6
324.09 1.5

Annotations:

C ?1D-GalNAc,p/#ccleavage--6a2D-NeuGc,p$MONO,Und,-H,0,redEnd
342.33 0.7
348.21 0.7
350.17 1.0
351.05 0.4
366.17 1.3

Annotations:

Z redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#zcleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
384.06 10.1

Annotations:

Y redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#ycleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
384.37 4.6

Annotations:

Y redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#ycleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
385.18 2.6
402.85 0.9
409.12 1.4

Annotations:

^{0,4}X_{NeuGc}Y redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#xcleavage_0_4)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd
417.1 4.8
417.37 1.3
425.34 0.7
435.18 4.0
435.4 1.4
436.2 4.9
445.17 0.9
448.04 0.3
453.21 0.5
453.8 3.3

Annotations:

^{0,2}X_{NeuGc} redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#xcleavage_0_2)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
454.15 10.4

Annotations:

^{0,2}X_{NeuGc} redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#xcleavage_0_2)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
454.48 0.6

Annotations:

^{0,2}X_{NeuGc} redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#xcleavage_0_2)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
455.11 4.5
458.91 1.0
464.88 0.4
467.46 1.6

Annotations:

^{1,3}X_{NeuGc}Z redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#xcleavage_1_3)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
468.17 0.4
477.11 7.1
477.8 1.8
478.33 1.2
480.25 0.7
485.26 1.3

Annotations:

^{1,3}X_{NeuGc}Y redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#xcleavage_1_3)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd
486.05 0.4
489.17 0.7
492.72 1.0
493.25 5.3
494.02 1.7
506.92 1.3
507.21 2.4
507.92 2.0
510.17 2.9
510.92 1.3

Annotations:

Z redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
511.26 4.3

Annotations:

Z redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
512.22 2.0
513.16 1.0
528.55 0.5
529.29 4.2

Annotations:

Y redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd
530.42 2.6
530.69 1.4
531.09 0.5
533.44 0.5
536.98 0.4
565.91 1.0
569.25 0.7
570.45 0.6
572.13 0.5

Annotations:

^{2,5}A_{GalNAc} ?1D-GalNAc,p/#acleavage_2_5(--6a2D-NeuGc,p)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
579.21 2.9
580.16 0.4
582.87 1.0
583.16 0.6
583.45 0.8
586.85 0.7

Annotations:

^{2,5}X_{Gal} redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p)--3b1D-Gal,p/#xcleavage_2_5$MONO,Und,-H,0,redEnd
587.36 1.0

Annotations:

^{2,5}X_{Gal} redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p)--3b1D-Gal,p/#xcleavage_2_5$MONO,Und,-H,0,redEnd
587.63 2.6

Annotations:

^{2,5}X_{Gal} redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p)--3b1D-Gal,p/#xcleavage_2_5$MONO,Und,-H,0,redEnd
597.2 123.7
598.16 30.9
601.26 0.5

Annotations:

^{0,3}X_{Gal} redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p)--3b1D-Gal,p/#xcleavage_0_3$MONO,Und,-H,0,redEnd ^{1,4}X_{Gal} redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p)--3b1D-Gal,p/#xcleavage_1_4$MONO,Und,-H,0,redEnd
605.4 0.3
614.24 0.6
614.94 2.1
629.31 0.5
630.27 3.5
637.17 0.6
647.09 1.3

Annotations:

^{1,3}X_{NeuGc} redEnd--??1D-GalNAc,p(--6a2D-NeuGc,p/#xcleavage_1_3)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
649.07 1.2
655.32 1.9
656.16 0.6
659.02 2.1
663.61 1.5

There are 18 similar spectra:

Id Structure Score

4844

0.97

7622

0.92

5702

0.87

7402

0.86

7431

0.86

6799

0.81

3494

0.78

6710

0.76

5703

0.75

4205

0.75

3748

0.74

7623

0.74

3495

0.73

4080

0.73

4261

0.71

5249

0.71

6709

0.69

5199

0.54

Structure Format

SNFG Oxford Text

Structure details

Reducing Mass: 690.25
(Calculated Monoisotopic)

Reducing End: Reduced

Persubstitution: Underivatised

Biological Context

Taxonomy - Bos Taurus
Tissue - Cervix Mucus

HPLC

Column NA

Method

  • 78 min gradient with Approx 3-5 ul/min (static split from 250 ul/min) run rate
  • 10 mM (NH4)HCO3
  • 10 mM (NH4)HCO3 in 80% acetonitrile

Mass Spec

Thermo Fisher LTQ Linear Ion Trap ESI

MIRAGE Structural data

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