Structure

    redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--3b1D-Gal,p$MONO,Und,-H,0,redEnd

An E-workflow for implementing guidelines in glycomics mass spectrometry

GlyTouCan Accession Number: Loading...

Peak Intensity
262.96 0.4
298.83 1.1
317.98 0.6
324.15 3.3

Annotations:

Y^{0,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p/#ycleavage)--3b1D-Gal,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd Y^{1,3}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p/#ycleavage)--3b1D-Gal,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd Y^{2,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p/#ycleavage)--3b1D-Gal,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd
329.24 1.2
341.39 0.8
342.01 0.8
365.79 1.2

Annotations:

Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p/#zcleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
370.9 4.2
372.04 0.6
383.65 0.5
384.15 7.2

Annotations:

Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p/#ycleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
385.22 1.4
389.14 1.4
408.43 0.8

Annotations:

^{0,4}A_{GalNAc}Y ?1D-GalNAc,p/#acleavage_0_4--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd C^{0,2}X_{Gal} ?1D-GalNAc,p/#ccleavage--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd
460.94 0.4
479.13 0.8
509.19 1.1
510.27 1.7

Annotations:

B ?1D-GalNAc,p/#bcleavage--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p$MONO,Und,-H,0,redEnd
511.11 0.6
521.24 3.8
521.95 0.5
522.23 1.0
532.96 1.0
533.38 1.5
551.17 5.6

Annotations:

ZZ redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#zcleavage)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ZZ redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#zcleavage)--?b1D-Gal,p)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
551.5 1.2

Annotations:

ZZ redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#zcleavage)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ZZ redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#zcleavage)--?b1D-Gal,p)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
552.36 0.8
553.39 1.6

Annotations:

ZY redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd YZ redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
554.45 1.0
570.07 1.0

Annotations:

^{0,4}A_{GalNAc} ?1D-GalNAc,p/#acleavage_0_4--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p$MONO,Und,-H,0,redEnd
572.52 0.8
587.31 1.2

Annotations:

YY redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#ycleavage)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd YY redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#ycleavage)--?b1D-Gal,p)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd
655.42 0.8

Annotations:

^{1,3}X_{Fuc}Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_1_3)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{2,4}X_{Fuc}Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_2_4)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd Z^{0,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd Z^{1,3}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd Z^{2,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd ^{0,4}X_{Gal}Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_0_4)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd ^{1,3}X_{Gal}Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_1_3)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd ^{2,4}X_{Gal}Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_2_4)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd ^{1,3}X_{Fuc}Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_1_3)--?b1D-Gal,p)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd ^{2,4}X_{Fuc}Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_2_4)--?b1D-Gal,p)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
673.45 1.4

Annotations:

^{1,3}X_{Fuc}Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_1_3)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{2,4}X_{Fuc}Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_2_4)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{0,4}X_{Gal}Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_0_4)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd ^{1,3}X_{Gal}Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_1_3)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd ^{2,4}X_{Gal}Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_2_4)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd ^{1,3}X_{Fuc}Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_1_3)--?b1D-Gal,p)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd ^{2,4}X_{Fuc}Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_2_4)--?b1D-Gal,p)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd Y^{0,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd Y^{1,3}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd Y^{2,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd
673.89 0.8
674.25 0.6
679.15 0.5
714.21 0.5
715.27 9.3

Annotations:

Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
716.28 1.4
728.17 0.3
733.24 12.0

Annotations:

Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd
733.88 1.6
734.33 3.3
736.19 1.0
749.14 0.6

Annotations:

Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#ycleavage)--?b1D-Gal,p)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
803.89 1.0
832.26 3.3
835.23 7.8

Annotations:

^{0,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_0_4)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{1,3}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_1_3)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{2,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_2_4)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{1,3}X_{Fuc} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_1_3)--?b1D-Gal,p)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{2,4}X_{Fuc} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_2_4)--?b1D-Gal,p)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{0,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p)--3b1D-Gal,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd ^{1,3}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p)--3b1D-Gal,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd ^{2,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p)--3b1D-Gal,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd
846.93 2.1

Annotations:

^{1,5}A_{GalNAc} ?1D-GalNAc,p/#acleavage_1_5(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
850.55 0.6
853.36 1.7
854.21 1.5
1257.91 1.5
1278.45 0.6
1624.75 0.6
1642.26 0.7
1663.8 1.8
1676.73 1.9

There are 23 similar spectra:

Id Structure Score

5573

0.88

4265

0.87

5250

0.87

6737

0.86

5574

0.82

3975

0.80

5787

0.77

7652

0.77

7668

0.77

6591

0.73

7223

0.69

4864

0.68

7653

0.61

7669

0.61

5578

0.61

3976

0.59

3126

0.59

7172

0.58

5180

0.56

5791

0.56

4865

0.56

6808

0.55

7224

0.54

Structure Format

SNFG Oxford Text

Structure details

Reducing Mass: 894.35
(Calculated Monoisotopic)

Reducing End: Reduced

Persubstitution: Underivatised

Biological Context

Taxonomy - Bos Taurus
Tissue - Cervix Mucus

HPLC

Column NA

Method

  • 78 min gradient with Approx 3-5 ul/min (static split from 250 ul/min) run rate
  • 10 mM (NH4)HCO3
  • 10 mM (NH4)HCO3 in 80% acetonitrile

Mass Spec

Thermo Fisher LTQ Linear Ion Trap ESI

MIRAGE Structural data

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