Structure

    redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p)--3b1D-Gal,p$MONO,Und,-H,0,redEnd

An E-workflow for implementing guidelines in glycomics mass spectrometry

GlyTouCan Accession Number: Loading...

Peak Intensity
262.96 0.4
298.83 1.1
317.98 0.6
324.15 3.3

Annotations:

Y^{0,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p/#ycleavage)--3b1D-Gal,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd Y^{1,3}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p/#ycleavage)--3b1D-Gal,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd Y^{2,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p/#ycleavage)--3b1D-Gal,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd
329.24 1.2
341.39 0.8
342.01 0.8
365.79 1.2

Annotations:

Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p/#zcleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
370.9 4.2
372.04 0.6
383.65 0.5
384.15 7.2

Annotations:

Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p/#ycleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
385.22 1.4
389.14 1.4
408.43 0.8

Annotations:

^{0,4}A_{GalNAc}Y ?1D-GalNAc,p/#acleavage_0_4--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd C^{0,2}X_{Gal} ?1D-GalNAc,p/#ccleavage--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_0_2$MONO,Und,-H,0,redEnd
460.94 0.4
479.13 0.8
509.19 1.1
510.27 1.7

Annotations:

B ?1D-GalNAc,p/#bcleavage--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p$MONO,Und,-H,0,redEnd
511.11 0.6
521.24 3.8
521.95 0.5
522.23 1.0
532.96 1.0
533.38 1.5
551.17 5.6

Annotations:

ZZ redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#zcleavage)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ZZ redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#zcleavage)--?b1D-Gal,p)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
551.5 1.2

Annotations:

ZZ redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#zcleavage)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ZZ redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#zcleavage)--?b1D-Gal,p)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
552.36 0.8
553.39 1.6

Annotations:

ZY redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd YZ redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
554.45 1.0
570.07 1.0

Annotations:

^{0,4}A_{GalNAc} ?1D-GalNAc,p/#acleavage_0_4--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p$MONO,Und,-H,0,redEnd
572.52 0.8
587.31 1.2

Annotations:

YY redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#ycleavage)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd YY redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#ycleavage)--?b1D-Gal,p)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd
655.42 0.8

Annotations:

^{1,3}X_{Fuc}Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_1_3)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{2,4}X_{Fuc}Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_2_4)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd Z^{0,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd Z^{1,3}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd Z^{2,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd ^{0,4}X_{Gal}Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_0_4)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd ^{1,3}X_{Gal}Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_1_3)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd ^{2,4}X_{Gal}Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_2_4)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd ^{1,3}X_{Fuc}Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_1_3)--?b1D-Gal,p)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd ^{2,4}X_{Fuc}Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_2_4)--?b1D-Gal,p)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
673.45 1.4

Annotations:

^{1,3}X_{Fuc}Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_1_3)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{2,4}X_{Fuc}Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_2_4)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{0,4}X_{Gal}Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_0_4)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd ^{1,3}X_{Gal}Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_1_3)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd ^{2,4}X_{Gal}Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_2_4)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd ^{1,3}X_{Fuc}Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_1_3)--?b1D-Gal,p)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd ^{2,4}X_{Fuc}Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_2_4)--?b1D-Gal,p)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd Y^{0,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd Y^{1,3}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd Y^{2,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd
673.89 0.8
674.25 0.6
679.15 0.5
714.21 0.5
715.27 9.3

Annotations:

Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#zcleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd Z redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p)--3b1D-Gal,p/#zcleavage$MONO,Und,-H,0,redEnd
716.28 1.4
728.17 0.3
733.24 12.0

Annotations:

Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#ycleavage)--3b1D-Gal,p$MONO,Und,-H,0,redEnd Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p)--3b1D-Gal,p/#ycleavage$MONO,Und,-H,0,redEnd
733.88 1.6
734.33 3.3
736.19 1.0
749.14 0.6

Annotations:

Y redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#ycleavage)--?b1D-Gal,p)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
803.89 1.0
832.26 3.3
835.23 7.8

Annotations:

^{0,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_0_4)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{1,3}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_1_3)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{2,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p/#xcleavage_2_4)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{1,3}X_{Fuc} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_1_3)--?b1D-Gal,p)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{2,4}X_{Fuc} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p/#xcleavage_2_4)--?b1D-Gal,p)--3b1D-Gal,p$MONO,Und,-H,0,redEnd ^{0,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p)--3b1D-Gal,p/#xcleavage_0_4$MONO,Und,-H,0,redEnd ^{1,3}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p)--3b1D-Gal,p/#xcleavage_1_3$MONO,Und,-H,0,redEnd ^{2,4}X_{Gal} redEnd--??1D-GalNAc,p(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p)--3b1D-Gal,p/#xcleavage_2_4$MONO,Und,-H,0,redEnd
846.93 2.1

Annotations:

^{1,5}A_{GalNAc} ?1D-GalNAc,p/#acleavage_1_5(--6b1D-GlcNAc,p(--?a1L-Fuc,p)--?b1D-Gal,p)--3b1D-Gal,p$MONO,Und,-H,0,redEnd
850.55 0.6
853.36 1.7
854.21 1.5
1257.91 1.5
1278.45 0.6
1624.75 0.6
1642.26 0.7
1663.8 1.8
1676.73 1.9

There are 30 similar spectra:

Id Structure Score

0.90

5573

0.88

4265

0.87

5250

0.87

6737

0.86

5574

0.82

3975

0.80

5787

0.77

0.77

7652

0.77

7668

0.77

0.73

6591

0.73

7223

0.69

0.68

4864

0.68

0.61

7653

0.61

7669

0.61

5578

0.61

3976

0.59

3126

0.59

0.58

7172

0.58

5180

0.56

5791

0.56

0.56

4865

0.56

6808

0.55

7224

0.54

Structure Format

SNFG Oxford Text

Structure details

Reducing Mass: 894.35
(Calculated Monoisotopic)

Reducing End: Reduced

Persubstitution: Underivatised

Biological Context

Taxonomy - Bos Taurus
Tissue - Cervix Mucus

HPLC

Column NA

Method

  • 78 min gradient with Approx 3-5 ul/min (static split from 250 ul/min) run rate
  • 10 mM (NH4)HCO3
  • 10 mM (NH4)HCO3 in 80% acetonitrile

Mass Spec

Thermo Fisher LTQ Linear Ion Trap ESI

MIRAGE Structural data

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