Structure

    redEnd--??1D-GalNAc,p(--3b1D-Gal,p--3a2D-NeuAc,p)--6a2D-NeuAc,p$MONO,Und,-H,0,redEnd

The O-glycome of human nigrostriatal tissue and its alteration in Parkinsons disease

GlyTouCan Accession Number: Loading...

Peak Intensity
288.05 6.9
288.94 2.6
290.16 189.6

Annotations:

B ?1D-GalNAc,p/#bcleavage--6a2D-NeuAc,p$MONO,Und,-H,0,redEnd B b1D-Gal,p/#bcleavage--3a2D-NeuAc,p$MONO,Und,-H,0,redEnd
291.06 1.7
308.26 6.9

Annotations:

C ?1D-GalNAc,p/#ccleavage--6a2D-NeuAc,p$MONO,Und,-H,0,redEnd C b1D-Gal,p/#ccleavage--3a2D-NeuAc,p$MONO,Und,-H,0,redEnd
349.93 1.5

Annotations:

^{0,4}A_{GalNAc} ?1D-GalNAc,p/#acleavage_0_4--6a2D-NeuAc,p$MONO,Und,-H,0,redEnd ^{1,3}A_{Gal} b1D-Gal,p/#acleavage_1_3--3a2D-NeuAc,p$MONO,Und,-H,0,redEnd ^{2,4}A_{Gal} b1D-Gal,p/#acleavage_2_4--3a2D-NeuAc,p$MONO,Und,-H,0,redEnd
366.38 1.6

Annotations:

YZ redEnd--??1D-GalNAc,p(--3b1D-Gal,p--3a2D-NeuAc,p/#ycleavage)--6a2D-NeuAc,p/#zcleavage$MONO,Und,-H,0,redEnd ZY redEnd--??1D-GalNAc,p(--3b1D-Gal,p--3a2D-NeuAc,p/#zcleavage)--6a2D-NeuAc,p/#ycleavage$MONO,Und,-H,0,redEnd
384.39 8.8

Annotations:

YY redEnd--??1D-GalNAc,p(--3b1D-Gal,p--3a2D-NeuAc,p/#ycleavage)--6a2D-NeuAc,p/#ycleavage$MONO,Und,-H,0,redEnd
435.29 4.0
444.1 1.1
451.46 1.8
453.28 1.8
454.26 33.1
466.38 1.2
470.21 3.1

Annotations:

C ?1D-GalNAc,p/#ccleavage--3b1D-Gal,p--3a2D-NeuAc,p$MONO,Und,-H,0,redEnd
477.4 10.3
482.22 1.3
493.16 5.2
493.41 2.1
494.23 7.0
495.32 10.1

Annotations:

Z redEnd--??1D-GalNAc,p(--3b1D-Gal,p/#zcleavage)--6a2D-NeuAc,p$MONO,Und,-H,0,redEnd
496.42 2.2
507.31 1.8
513.33 29.5

Annotations:

Y redEnd--??1D-GalNAc,p(--3b1D-Gal,p/#ycleavage)--6a2D-NeuAc,p$MONO,Und,-H,0,redEnd
514.36 8.6
515.41 1.1
516.83 1.4
537.13 3.4
537.44 4.1
558.41 1.1
567.02 4.6
567.35 6.3
579.28 1.3
581.26 10.7
597.36 70.4
603.23 1.1
613.7 1.9
614.19 4.1
614.5 4.7
615.47 52.4
631.33 3.2
639.24 2.4
655.42 20.6
656.31 42.3
657.37 677.8

Annotations:

Z redEnd--??1D-GalNAc,p(--3b1D-Gal,p--3a2D-NeuAc,p)--6a2D-NeuAc,p/#zcleavage$MONO,Und,-H,0,redEnd Z redEnd--??1D-GalNAc,p(--3b1D-Gal,p--3a2D-NeuAc,p/#zcleavage)--6a2D-NeuAc,p$MONO,Und,-H,0,redEnd
658.37 8.9
658.9 1.1
663.39 1.0
667.27 1.0
672.36 2.2
673.42 180.9
674.37 382.7
675.34 24429.0

Annotations:

Y redEnd--??1D-GalNAc,p(--3b1D-Gal,p--3a2D-NeuAc,p)--6a2D-NeuAc,p/#ycleavage$MONO,Und,-H,0,redEnd Y redEnd--??1D-GalNAc,p(--3b1D-Gal,p--3a2D-NeuAc,p/#ycleavage)--6a2D-NeuAc,p$MONO,Und,-H,0,redEnd
676.35 310.9
677.36 62.8
701.23 1.0
717.41 2.1
719.4 1.4
727.38 1.4
745.28 1.6
746.51 1.0
747.21 1.1
768.05 1.1
782.12 1.1
803.25 1.4
810.21 1.3
810.47 1.3
811.35 6.6
811.76 24.9
812.02 15.3
812.27 9.9
812.53 4.7
812.78 4.5
813.36 1.1
816.33 1.4
828.78 1.0
844.34 1.2
852.07 1.1
854.47 1.2
862.39 1.1
870.31 1.2
873.33 1.9
886.15 3.1
887.3 3.2
892.33 1.6
892.88 3.0
894.05 1.5
894.49 1.5
904.5 15.8
905.14 1.1
906.47 31.4
912.34 2.4
912.78 2.3
921.42 14.2
922.46 436.9
929.36 3.1
930.37 26.8
930.99 3.1
931.46 1.8
933.48 1.7

There are 37 similar spectra:

Id Structure Score

1.00

7184

1.00

5443

1.00

7629

1.00

4083

1.00

7175

1.00

5735

1.00

5796

1.00

5586

1.00

5521

1.00

3505

1.00

7151

1.00

7394

1.00

7423

1.00

7238

1.00

4812

1.00

1.00

6814

1.00

4208

1.00

4245

1.00

5237

1.00

5177

1.00

5183

1.00

8015

1.00

5207

1.00

3763

1.00

7684

0.98

7691

0.98

0.98

7696

0.98

0.98

6813

0.97

3977

0.96

7628

0.96

8013

0.94

8014

0.93

7153

0.58

Structure Format

SNFG Oxford Text

Structure details

Reducing Mass: 965.35
(Calculated Monoisotopic)

Reducing End: Reduced

Persubstitution: Underivatised

Biological Context

Taxonomy - Homo Sapiens
Tissue - Brain

HPLC

Column

Method

  • 78 min gradient with approx 3-5 ul/min (static split from 250 ul/min) run rate
  • 10 mM (NH4)HCO3
  • 10 mM (NH4)HCO3 in 80% acetonitrile

Mass Spec

Thermo Fisher LTQ Linear Ion Trap ESI

MIRAGE Structural data

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